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massarray compact system matrix assisted laser desorption ionization time  (agena bioscience)


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    agena bioscience massarray compact system matrix assisted laser desorption ionization time
    Massarray Compact System Matrix Assisted Laser Desorption Ionization Time, supplied by agena bioscience, used in various techniques. Bioz Stars score: 96/100, based on 66 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Average 96 stars, based on 66 article reviews
    massarray compact system matrix assisted laser desorption ionization time - by Bioz Stars, 2026-05
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    DNA Methylation Status of miR-20b-5p by <t>MassARRAY</t> (A) Methylation profile of CpG sites for the miR-20b-5p gene. The color of the circles is related to the percentage of methylation at each CpG site. Boxes indicate the different methylation patterns between 14 ESCC samples and the corresponding tissues. (B) Hierarchical cluster analysis of CpG site methylation profiles of the miR-20b-5p promoter region in esophageal squamous cell carcinoma (n = 14) and control esophageal tumors (n = 14). The color gradient between green and red indicates methylation of each miR-20b-5p unit in each sample ranging from 0% to 60%. Gray represents technically inadequate or missing data. (C) Evaluation of CpG methylation within the miR-20b-5p promoter. The distribution of the seven analyzed CpG units within miR-20b-5p is shown. Data are presented as the mean value ± SD from triplicate experiments. @@ p < 0.01.
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    DNA Methylation Status of miR-20b-5p by <t>MassARRAY</t> (A) Methylation profile of CpG sites for the miR-20b-5p gene. The color of the circles is related to the percentage of methylation at each CpG site. Boxes indicate the different methylation patterns between 14 ESCC samples and the corresponding tissues. (B) Hierarchical cluster analysis of CpG site methylation profiles of the miR-20b-5p promoter region in esophageal squamous cell carcinoma (n = 14) and control esophageal tumors (n = 14). The color gradient between green and red indicates methylation of each miR-20b-5p unit in each sample ranging from 0% to 60%. Gray represents technically inadequate or missing data. (C) Evaluation of CpG methylation within the miR-20b-5p promoter. The distribution of the seven analyzed CpG units within miR-20b-5p is shown. Data are presented as the mean value ± SD from triplicate experiments. @@ p < 0.01.
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    Journal: bioRxiv

    Article Title: Transcriptional regulation of SLIT2 expression in pancreatic cancer cell lines

    doi: 10.1101/2020.09.29.319129

    Figure Lengend Snippet:

    Article Snippet: The resulting PCR product was then in vitro transcribed and cleaved by RNase A using the MassCLEAVE T-only kit, spotted onto a Spectro CHIP array, and analyzed using the MassARRAY Compact System matrix-assisted laser desorption/ionization-time-of-flight mass spectrometer (Sequenom, San Diego, CA) at the University of Arizona Genetics Core.

    Techniques: Methylation, Isolation, Amplification, In Vitro, Mass Spectrometry, Expressing

    DNA Methylation Status of miR-20b-5p by MassARRAY (A) Methylation profile of CpG sites for the miR-20b-5p gene. The color of the circles is related to the percentage of methylation at each CpG site. Boxes indicate the different methylation patterns between 14 ESCC samples and the corresponding tissues. (B) Hierarchical cluster analysis of CpG site methylation profiles of the miR-20b-5p promoter region in esophageal squamous cell carcinoma (n = 14) and control esophageal tumors (n = 14). The color gradient between green and red indicates methylation of each miR-20b-5p unit in each sample ranging from 0% to 60%. Gray represents technically inadequate or missing data. (C) Evaluation of CpG methylation within the miR-20b-5p promoter. The distribution of the seven analyzed CpG units within miR-20b-5p is shown. Data are presented as the mean value ± SD from triplicate experiments. @@ p < 0.01.

    Journal: Molecular Therapy. Nucleic Acids

    Article Title: Functional Significance and Therapeutic Potential of miRNA-20b-5p in Esophageal Squamous Cell Carcinoma

    doi: 10.1016/j.omtn.2020.05.015

    Figure Lengend Snippet: DNA Methylation Status of miR-20b-5p by MassARRAY (A) Methylation profile of CpG sites for the miR-20b-5p gene. The color of the circles is related to the percentage of methylation at each CpG site. Boxes indicate the different methylation patterns between 14 ESCC samples and the corresponding tissues. (B) Hierarchical cluster analysis of CpG site methylation profiles of the miR-20b-5p promoter region in esophageal squamous cell carcinoma (n = 14) and control esophageal tumors (n = 14). The color gradient between green and red indicates methylation of each miR-20b-5p unit in each sample ranging from 0% to 60%. Gray represents technically inadequate or missing data. (C) Evaluation of CpG methylation within the miR-20b-5p promoter. The distribution of the seven analyzed CpG units within miR-20b-5p is shown. Data are presented as the mean value ± SD from triplicate experiments. @@ p < 0.01.

    Article Snippet: In addition, the mass spectra data were obtained with MassARRAY compact matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) (Agena Bioscience, USA), while the methylation status of the individual units were evaluated with EpiTYPER 1.0.5 (Agena Bioscience, USA).

    Techniques: DNA Methylation Assay, Methylation, Control, CpG Methylation Assay